Outer dimensions are off by a few tenths, and holes are consistently undersized.
does not fitholes undersizedpins too tight
Ordered by how often each is actually responsible, not by how interesting it is. Work down the list.
A nozzle traces a polygon inside a circle, so the hole comes out small on every printer ever made. Compensate holes in CAD or with hole compensation. Do NOT try to fix it with flow.
Calibration step: Check dimensional accuracy and hole size →
Flow error reads as dimensional error. Calibrate flow before applying any size compensation, or you will compensate for the wrong thing.
Calibration step: Calibrate flow ratio / extrusion multiplier →
ABS shrinks about 0.8% and nylon about 1.5%. On a 100 mm part that is 0.8 mm and 1.5 mm respectively — far beyond any tuning.
Print the fit gauge and find your printer's real number, then design to it.
Calibration step: Find your real clearance for fitted parts →